Before you start VeeDubb- make your life a little easier right here:
http://www.partimage.org/
Make a 'copy' of your working install wether it be to another partition or to a cd. Partimage is nice in that it doesn't copy an entire partition- only the data on the partition. You can see how this will make life easier eh? Then this weekend I'll have some time to mess about with recompiling this crazy one-off kernel. It can be done. I realize that you need to get this done asap as you probably didn't buy the pocket pc just for games. Perhaps garyng would be willing to share some of his vast wisdom.