Quote Originally Posted by aggieforester05
... Does anyone know how I can fix my windows boot error through knoppix, or why my computer is freezing up when I try saving or deleting big files in knoppix?...
Until this current 5.0.1 release of Knoppix there were known to be data corruption problems if you wrote to a NTFS partition with Knoppix (even though some previous versions had software that supposedly could do it). Many of us, including myself, still don't trust that Knoppix can write to NTFS partitions safely. Your post only further increases my concern.

My best advice would be to use Knoppix to backup any files that you need and then do a complete reinstall of Windows. Be behind a router firewall when you do if you don't want reinfested almost instantly.