Is there a way to either make another partition or hide the Knoppix related files from showing up when the usb drive is inserted into Windows.

Or at the least be able to put both the Boot and Knoppix folder into one folder '~' so that it would be at the top and out of the way for any other software I put on the drive. It's a 4GB drive so I will be putting alot of Windows software on there as well.