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gui iso editor
hello
do forgive the sales pitch from a guy with 2 posts 
i'm the author of iso master ( http://littlesvr.ca/isomaster ), an open source iso editor for linux. basically you can add and delete files/folders from the image using a gui.
i would like to propose that you consider using it to customise the knoppix cd. unfortunately i know 0 about how to customise a knoppix but i did create a modified image of the knoppix 5.0.1 cd image using the app and it seems to work fine. customising has got to do with adding files.. i tested that to make sure it works with knoppix.
i do hope you will find a use for iso master, and let me know if there are features you want or bugs you find
cheers
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