I was thinking about an another things ..
If you burn persistant home in you have burn home persistant in your cd ;; when you boot in a normal PC it's the same as usually (you have even the option "boot : knoppix nohome")...
So we could add in this script the new linking way ;;;

When I was speaking about ~/etc/... it's not a burn on the cd it justt a partition who has been mount dutring the boot wiith home persistant and which the script has re-link the directorie ... (if I'm not clear, tell it me, I'm not english ...)
The approach could be in different way the script burn doesn't need to change I think, I've to look more about it...

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